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MODE-TASK: large-scale protein motion tools

Ross, Caroline; Nizami, Bilal; Glenister, Michael; Amamuddy, Olivier Sheik; Atilgan, Ali Rana; Atilgan, Canan; Bishop, Ozlem Tastan


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  <dc:creator>Ross, Caroline</dc:creator>
  <dc:creator>Nizami, Bilal</dc:creator>
  <dc:creator>Glenister, Michael</dc:creator>
  <dc:creator>Amamuddy, Olivier Sheik</dc:creator>
  <dc:creator>Atilgan, Ali Rana</dc:creator>
  <dc:creator>Atilgan, Canan</dc:creator>
  <dc:creator>Bishop, Ozlem Tastan</dc:creator>
  <dc:date>2018-01-01</dc:date>
  <dc:description>MODE-TASK, a novel and versatile software suite, comprises Principal Component Analysis, Multidimensional Scaling, and t-Distributed Stochastic Neighbor Embedding techniques using Molecular Dynamics trajectories. MODE-TASK also includes a Normal Mode Analysis tool based on Anisotropic Network Model so as to provide a variety of ways to analyse and compare large-scale motions of protein complexes for which long MD simulations are prohibitive. Beside the command line function, a GUI has been developed as a PyMOL plugin.</dc:description>
  <dc:identifier>https://aperta.ulakbim.gov.trrecord/36087</dc:identifier>
  <dc:identifier>oai:zenodo.org:36087</dc:identifier>
  <dc:rights>info:eu-repo/semantics/openAccess</dc:rights>
  <dc:rights>http://www.opendefinition.org/licenses/cc-by</dc:rights>
  <dc:source>BIOINFORMATICS 34(21) 3759-3763</dc:source>
  <dc:title>MODE-TASK: large-scale protein motion tools</dc:title>
  <dc:type>info:eu-repo/semantics/article</dc:type>
  <dc:type>publication-article</dc:type>
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