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MODE-TASK: large-scale protein motion tools

Ross, Caroline; Nizami, Bilal; Glenister, Michael; Amamuddy, Olivier Sheik; Atilgan, Ali Rana; Atilgan, Canan; Bishop, Ozlem Tastan


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        "affiliation": "Rhodes Univ, Dept Biochem & Microbiol, Res Unit Bioinformat RUBi, ZA-6140 Grahamstown, South Africa", 
        "name": "Ross, Caroline"
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      {
        "name": "Nizami, Bilal"
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      {
        "affiliation": "Rhodes Univ, Dept Biochem & Microbiol, Res Unit Bioinformat RUBi, ZA-6140 Grahamstown, South Africa", 
        "name": "Glenister, Michael"
      }, 
      {
        "affiliation": "Rhodes Univ, Dept Biochem & Microbiol, Res Unit Bioinformat RUBi, ZA-6140 Grahamstown, South Africa", 
        "name": "Amamuddy, Olivier Sheik"
      }, 
      {
        "affiliation": "Sabanci Univ, Fac Engn & Nat Sci, TR-34956 Tuzla, Turkey", 
        "name": "Atilgan, Ali Rana"
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      {
        "affiliation": "Sabanci Univ, Fac Engn & Nat Sci, TR-34956 Tuzla, Turkey", 
        "name": "Atilgan, Canan"
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      {
        "affiliation": "Rhodes Univ, Dept Biochem & Microbiol, Res Unit Bioinformat RUBi, ZA-6140 Grahamstown, South Africa", 
        "name": "Bishop, Ozlem Tastan"
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    "description": "MODE-TASK, a novel and versatile software suite, comprises Principal Component Analysis, Multidimensional Scaling, and t-Distributed Stochastic Neighbor Embedding techniques using Molecular Dynamics trajectories. MODE-TASK also includes a Normal Mode Analysis tool based on Anisotropic Network Model so as to provide a variety of ways to analyse and compare large-scale motions of protein complexes for which long MD simulations are prohibitive. Beside the command line function, a GUI has been developed as a PyMOL plugin.", 
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