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MODE-TASK: large-scale protein motion tools

Ross, Caroline; Nizami, Bilal; Glenister, Michael; Amamuddy, Olivier Sheik; Atilgan, Ali Rana; Atilgan, Canan; Bishop, Ozlem Tastan


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{
  "DOI": "10.1093/bioinformatics/bty427", 
  "abstract": "MODE-TASK, a novel and versatile software suite, comprises Principal Component Analysis, Multidimensional Scaling, and t-Distributed Stochastic Neighbor Embedding techniques using Molecular Dynamics trajectories. MODE-TASK also includes a Normal Mode Analysis tool based on Anisotropic Network Model so as to provide a variety of ways to analyse and compare large-scale motions of protein complexes for which long MD simulations are prohibitive. Beside the command line function, a GUI has been developed as a PyMOL plugin.", 
  "author": [
    {
      "family": "Ross", 
      "given": " Caroline"
    }, 
    {
      "family": "Nizami", 
      "given": " Bilal"
    }, 
    {
      "family": "Glenister", 
      "given": " Michael"
    }, 
    {
      "family": "Amamuddy", 
      "given": " Olivier Sheik"
    }, 
    {
      "family": "Atilgan", 
      "given": " Ali Rana"
    }, 
    {
      "family": "Atilgan", 
      "given": " Canan"
    }, 
    {
      "family": "Bishop", 
      "given": " Ozlem Tastan"
    }
  ], 
  "container_title": "BIOINFORMATICS", 
  "id": "36087", 
  "issue": "21", 
  "issued": {
    "date-parts": [
      [
        2018, 
        1, 
        1
      ]
    ]
  }, 
  "page": "3759-3763", 
  "title": "MODE-TASK: large-scale protein motion tools", 
  "type": "article-journal", 
  "volume": "34"
}
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