Diğer Açık Erişim

Expressions of the satellite repeat HSAT5 and transposable elements are implicated in disease progression and survival in glioma (Supplementary Files)

Köse, Sıla Naz; Yaraş, Tutku; Bursalı, Ahmet; Oktay, Yavuz; Yandım, Cihangir; Karakülah, Gökhan


JSON

{
  "conceptdoi": "10.48623/aperta.273724", 
  "conceptrecid": "273724", 
  "created": "2024-07-05T10:21:13.568694+00:00", 
  "doi": "10.48623/aperta.273725", 
  "files": [
    {
      "bucket": "e798e100-4a0d-4c21-838c-816cdbfe8799", 
      "checksum": "md5:32481143c7d50839d95e015e5fc9976f", 
      "key": "Supplementary File 10.xlsx", 
      "links": {
        "self": "https://aperta.ulakbim.gov.tr/api/files/e798e100-4a0d-4c21-838c-816cdbfe8799/Supplementary%20File%2010.xlsx"
      }, 
      "size": 479663, 
      "type": "xlsx"
    }, 
    {
      "bucket": "e798e100-4a0d-4c21-838c-816cdbfe8799", 
      "checksum": "md5:6a854fe0792c0d2177cae946b4939809", 
      "key": "Supplementary file 11.xlsx", 
      "links": {
        "self": "https://aperta.ulakbim.gov.tr/api/files/e798e100-4a0d-4c21-838c-816cdbfe8799/Supplementary%20file%2011.xlsx"
      }, 
      "size": 773223, 
      "type": "xlsx"
    }, 
    {
      "bucket": "e798e100-4a0d-4c21-838c-816cdbfe8799", 
      "checksum": "md5:99b28b88310602e04d159b8848a5c7a4", 
      "key": "Supplementary File 1.xlsx", 
      "links": {
        "self": "https://aperta.ulakbim.gov.tr/api/files/e798e100-4a0d-4c21-838c-816cdbfe8799/Supplementary%20File%201.xlsx"
      }, 
      "size": 46964, 
      "type": "xlsx"
    }, 
    {
      "bucket": "e798e100-4a0d-4c21-838c-816cdbfe8799", 
      "checksum": "md5:79dfdc34e226b5bf33c9783a8480d8c6", 
      "key": "Supplementary File 2.pdf", 
      "links": {
        "self": "https://aperta.ulakbim.gov.tr/api/files/e798e100-4a0d-4c21-838c-816cdbfe8799/Supplementary%20File%202.pdf"
      }, 
      "size": 143628, 
      "type": "pdf"
    }, 
    {
      "bucket": "e798e100-4a0d-4c21-838c-816cdbfe8799", 
      "checksum": "md5:dfe48ad1050a53c2ad75051ff1791cf5", 
      "key": "Supplementary File 3.xlsx", 
      "links": {
        "self": "https://aperta.ulakbim.gov.tr/api/files/e798e100-4a0d-4c21-838c-816cdbfe8799/Supplementary%20File%203.xlsx"
      }, 
      "size": 107120, 
      "type": "xlsx"
    }, 
    {
      "bucket": "e798e100-4a0d-4c21-838c-816cdbfe8799", 
      "checksum": "md5:fab7d5f701b1ade67ee6cd7e856cfd3b", 
      "key": "Supplementary File 4.xlsx", 
      "links": {
        "self": "https://aperta.ulakbim.gov.tr/api/files/e798e100-4a0d-4c21-838c-816cdbfe8799/Supplementary%20File%204.xlsx"
      }, 
      "size": 58707, 
      "type": "xlsx"
    }, 
    {
      "bucket": "e798e100-4a0d-4c21-838c-816cdbfe8799", 
      "checksum": "md5:5dddebd2444f31a0d86656845162813d", 
      "key": "Supplementary File 5.xlsx", 
      "links": {
        "self": "https://aperta.ulakbim.gov.tr/api/files/e798e100-4a0d-4c21-838c-816cdbfe8799/Supplementary%20File%205.xlsx"
      }, 
      "size": 80070, 
      "type": "xlsx"
    }, 
    {
      "bucket": "e798e100-4a0d-4c21-838c-816cdbfe8799", 
      "checksum": "md5:f75d9aef8d6b3a5318d1e05e8d70f23c", 
      "key": "Supplementary File 6.xlsx", 
      "links": {
        "self": "https://aperta.ulakbim.gov.tr/api/files/e798e100-4a0d-4c21-838c-816cdbfe8799/Supplementary%20File%206.xlsx"
      }, 
      "size": 176720, 
      "type": "xlsx"
    }, 
    {
      "bucket": "e798e100-4a0d-4c21-838c-816cdbfe8799", 
      "checksum": "md5:f0800036c60383ff4a4bfb880026c1bd", 
      "key": "Supplementary File 7.xlsx", 
      "links": {
        "self": "https://aperta.ulakbim.gov.tr/api/files/e798e100-4a0d-4c21-838c-816cdbfe8799/Supplementary%20File%207.xlsx"
      }, 
      "size": 12070, 
      "type": "xlsx"
    }, 
    {
      "bucket": "e798e100-4a0d-4c21-838c-816cdbfe8799", 
      "checksum": "md5:3962d0e785bd7752815b71733253977c", 
      "key": "Supplementary File 8.xlsx", 
      "links": {
        "self": "https://aperta.ulakbim.gov.tr/api/files/e798e100-4a0d-4c21-838c-816cdbfe8799/Supplementary%20File%208.xlsx"
      }, 
      "size": 50573, 
      "type": "xlsx"
    }, 
    {
      "bucket": "e798e100-4a0d-4c21-838c-816cdbfe8799", 
      "checksum": "md5:5ed9c0259ed25434862d0163d1582ebe", 
      "key": "Supplementary File 9.xlsx", 
      "links": {
        "self": "https://aperta.ulakbim.gov.tr/api/files/e798e100-4a0d-4c21-838c-816cdbfe8799/Supplementary%20File%209.xlsx"
      }, 
      "size": 351936, 
      "type": "xlsx"
    }, 
    {
      "bucket": "e798e100-4a0d-4c21-838c-816cdbfe8799", 
      "checksum": "md5:d8622242c0abee284083a1f763a957a9", 
      "key": "Supplementary Files List.pdf", 
      "links": {
        "self": "https://aperta.ulakbim.gov.tr/api/files/e798e100-4a0d-4c21-838c-816cdbfe8799/Supplementary%20Files%20List.pdf"
      }, 
      "size": 92422, 
      "type": "pdf"
    }
  ], 
  "id": 273725, 
  "links": {
    "badge": "https://aperta.ulakbim.gov.tr/badge/doi/10.48623/aperta.273725.svg", 
    "bucket": "https://aperta.ulakbim.gov.tr/api/files/e798e100-4a0d-4c21-838c-816cdbfe8799", 
    "conceptbadge": "https://aperta.ulakbim.gov.tr/badge/doi/10.48623/aperta.273724.svg", 
    "conceptdoi": "https://doi.org/10.48623/aperta.273724", 
    "doi": "https://doi.org/10.48623/aperta.273725", 
    "html": "https://aperta.ulakbim.gov.tr/record/273725", 
    "latest": "https://aperta.ulakbim.gov.tr/api/records/273725", 
    "latest_html": "https://aperta.ulakbim.gov.tr/record/273725"
  }, 
  "metadata": {
    "access_right": "open", 
    "access_right_category": "success", 
    "creators": [
      {
        "affiliation": "Izmir University of Economics", 
        "name": "K\u00f6se, S\u0131la Naz", 
        "orcid": "0000-0003-2358-1605"
      }, 
      {
        "affiliation": "Izmir Biomedicine and Genome Center", 
        "name": "Yara\u015f, Tutku", 
        "orcid": "0000-0003-3019-7900"
      }, 
      {
        "affiliation": "Izmir Biomedicine and Genome Center", 
        "name": "Bursal\u0131, Ahmet", 
        "orcid": "0000-0001-7050-769X"
      }, 
      {
        "affiliation": "Izmir Biomedicine and Genome Center", 
        "name": "Oktay, Yavuz", 
        "orcid": "0000-0002-0158-2693"
      }, 
      {
        "affiliation": "Izmir University of Economics", 
        "name": "Yand\u0131m, Cihangir", 
        "orcid": "0000-0002-2050-6186"
      }, 
      {
        "affiliation": "Izmir Biomedicine and Genome Center", 
        "name": "Karak\u00fclah, G\u00f6khan", 
        "orcid": "0000-0001-6706-1375"
      }
    ], 
    "description": "<p>The glioma genome encompasses a complex array of dysregulatory events, presenting a formidable challenge in managing this devastating disease. Despite the widespread distribution of repeat and transposable elements across the human genome, their involvement in glioma&#39;s molecular pathology and patient survival remains largely unexplored. In this study, we aimed to to characterize the links between the expressions of repeat / transposable elements with disease progression and survival in glioma patients. Hence, we analyzed the expression levels of satellite repeats and transposons along with genes in low-grade glioma (LGG) and high-grade glioma (HGG). Endogenous transposable elements LTR5 and HERV_a-int exhibited higher expression in HGG patients, along with immune response-related genes. Altogether, 16 transposable elements were associated with slower progression of disease in LGG patients. Conversely, 22 transposons and the HSAT5 satellite repeat were linked to a shorter event-free survival in HGG patients. Intriguingly, our weighted gene co-expression network analysis (WGCNA) disclosed that the HSAT5 satellite repeat resided in the same module network with genes implicated in chromosome segregation and nuclear division; potentially hinting at its contribution to disease pathogenesis. Collectively, we report for the first time that repeat and/or transposon expression could be related to disease progression and survival in glioma. The expressions of these elements seem to exert a protective effect during LGG-to-HGG progression, whereas they could have a detrimental impact once HGG is established. The results presented herein could serve as a foundation for further experimental work aimed at elucidating the molecular regulation of glioma genome.</p>", 
    "doi": "10.48623/aperta.273725", 
    "has_grant": false, 
    "journal": {
      "title": "Turkish Journal of Biology"
    }, 
    "keywords": [
      "Glioma", 
      "Glioblastoma", 
      "Transposon", 
      "Satellite Repeat", 
      "HSAT5", 
      "Survival"
    ], 
    "language": "eng", 
    "license": {
      "id": "cc-by-nc-sa-4.0"
    }, 
    "notes": "Supplementary Files for the article to be published in the Turkish Journal of Biology.", 
    "publication_date": "2024-07-05", 
    "related_identifiers": [
      {
        "identifier": "10.48623/aperta.273724", 
        "relation": "isVersionOf", 
        "scheme": "doi"
      }
    ], 
    "relations": {
      "version": [
        {
          "count": 1, 
          "index": 0, 
          "is_last": true, 
          "last_child": {
            "pid_type": "recid", 
            "pid_value": "273725"
          }, 
          "parent": {
            "pid_type": "recid", 
            "pid_value": "273724"
          }
        }
      ]
    }, 
    "resource_type": {
      "title": "Di\u011fer", 
      "type": "other"
    }, 
    "science_branches": [
      "Temel Bilimler > Ya\u015fam Bilimleri > Molek\u00fcler Biyoloji ve Genetik > Kanser Molek\u00fcler Biyolojisi", 
      "Temel Bilimler > Ya\u015fam Bilimleri > Molek\u00fcler Biyoloji ve Genetik", 
      "Temel Bilimler > Ya\u015fam Bilimleri > Molek\u00fcler Biyoloji ve Genetik > Genomiks"
    ], 
    "title": "Expressions of the satellite repeat HSAT5 and transposable elements are implicated in disease progression and survival in glioma (Supplementary Files)"
  }, 
  "owners": [
    2236
  ], 
  "revision": 1, 
  "stats": {
    "downloads": 156.0, 
    "unique_downloads": 116.0, 
    "unique_views": 123.0, 
    "version_downloads": 156.0, 
    "version_unique_downloads": 116.0, 
    "version_unique_views": 123.0, 
    "version_views": 132.0, 
    "version_volume": 34621846.0, 
    "views": 132.0, 
    "volume": 34621846.0
  }, 
  "updated": "2024-07-05T10:21:13.602557+00:00"
}
132
156
görüntülenme
indirilme
Tüm sürümler Bu sürüm
Görüntülenme 132132
İndirme 156156
Veri hacmi 34.6 MB34.6 MB
Tekil görüntülenme 123123
Tekil indirme 116116

Alıntı yap