Dergi makalesi Açık Erişim

cd2sbgnml: bidirectional conversion between CellDesigner and SBGN formats

Balaur, Irina; Roy, Ludovic; Mazein, Alexander; Karaca, S. Goekberk; Dogrusoz, Ugur; Barillot, Emmanuel; Zinovyev, Andrei


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        "affiliation": "Univ Lyon, European Inst Syst Biol & Med, CIRI UMR5308, CNRS,ENS,UCBL,INSERM, F-69007 Lyon, France", 
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      {
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        "affiliation": "Bilkent Univ, Dept Comp Engn, TR-06800 Ankara, Turkey", 
        "name": "Karaca, S. Goekberk"
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        "affiliation": "Bilkent Univ, Dept Comp Engn, TR-06800 Ankara, Turkey", 
        "name": "Dogrusoz, Ugur"
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    "description": "Motivation: CellDesigner is a well-established biological map editor used in many large-scale scientific efforts. However, the interoperability between the Systems Biology Graphical Notation (SBGN) Markup Language (SBGN-ML) and the CellDesigner's proprietary Systems Biology Markup Language (SBML) extension formats remains a challenge due to the proprietary extensions used in CellDesigner files.", 
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