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cd2sbgnml: bidirectional conversion between CellDesigner and SBGN formats

Balaur, Irina; Roy, Ludovic; Mazein, Alexander; Karaca, S. Goekberk; Dogrusoz, Ugur; Barillot, Emmanuel; Zinovyev, Andrei


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{
  "DOI": "10.1093/bioinformatics/btz969", 
  "abstract": "Motivation: CellDesigner is a well-established biological map editor used in many large-scale scientific efforts. However, the interoperability between the Systems Biology Graphical Notation (SBGN) Markup Language (SBGN-ML) and the CellDesigner's proprietary Systems Biology Markup Language (SBML) extension formats remains a challenge due to the proprietary extensions used in CellDesigner files.", 
  "author": [
    {
      "family": "Balaur", 
      "given": " Irina"
    }, 
    {
      "family": "Roy", 
      "given": " Ludovic"
    }, 
    {
      "family": "Mazein", 
      "given": " Alexander"
    }, 
    {
      "family": "Karaca", 
      "given": " S. Goekberk"
    }, 
    {
      "family": "Dogrusoz", 
      "given": " Ugur"
    }, 
    {
      "family": "Barillot", 
      "given": " Emmanuel"
    }, 
    {
      "family": "Zinovyev", 
      "given": " Andrei"
    }
  ], 
  "container_title": "BIOINFORMATICS", 
  "id": "6603", 
  "issue": "8", 
  "issued": {
    "date-parts": [
      [
        2020, 
        1, 
        1
      ]
    ]
  }, 
  "page": "2620-2622", 
  "title": "cd2sbgnml: bidirectional conversion between CellDesigner and SBGN formats", 
  "type": "article-journal", 
  "volume": "36"
}
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