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cd2sbgnml: bidirectional conversion between CellDesigner and SBGN formats

Balaur, Irina; Roy, Ludovic; Mazein, Alexander; Karaca, S. Goekberk; Dogrusoz, Ugur; Barillot, Emmanuel; Zinovyev, Andrei


DataCite XML

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  <identifier identifierType="URL">https://aperta.ulakbim.gov.tr/record/6603</identifier>
  <creators>
    <creator>
      <creatorName>Balaur, Irina</creatorName>
      <givenName>Irina</givenName>
      <familyName>Balaur</familyName>
      <affiliation>Univ Lyon, European Inst Syst Biol &amp; Med, CIRI UMR5308, CNRS,ENS,UCBL,INSERM, F-69007 Lyon, France</affiliation>
    </creator>
    <creator>
      <creatorName>Roy, Ludovic</creatorName>
      <givenName>Ludovic</givenName>
      <familyName>Roy</familyName>
    </creator>
    <creator>
      <creatorName>Mazein, Alexander</creatorName>
      <givenName>Alexander</givenName>
      <familyName>Mazein</familyName>
    </creator>
    <creator>
      <creatorName>Karaca, S. Goekberk</creatorName>
      <givenName>S. Goekberk</givenName>
      <familyName>Karaca</familyName>
      <affiliation>Bilkent Univ, Dept Comp Engn, TR-06800 Ankara, Turkey</affiliation>
    </creator>
    <creator>
      <creatorName>Dogrusoz, Ugur</creatorName>
      <givenName>Ugur</givenName>
      <familyName>Dogrusoz</familyName>
      <affiliation>Bilkent Univ, Dept Comp Engn, TR-06800 Ankara, Turkey</affiliation>
    </creator>
    <creator>
      <creatorName>Barillot, Emmanuel</creatorName>
      <givenName>Emmanuel</givenName>
      <familyName>Barillot</familyName>
    </creator>
    <creator>
      <creatorName>Zinovyev, Andrei</creatorName>
      <givenName>Andrei</givenName>
      <familyName>Zinovyev</familyName>
    </creator>
  </creators>
  <titles>
    <title>Cd2Sbgnml: Bidirectional Conversion Between Celldesigner And Sbgn Formats</title>
  </titles>
  <publisher>Aperta</publisher>
  <publicationYear>2020</publicationYear>
  <dates>
    <date dateType="Issued">2020-01-01</date>
  </dates>
  <resourceType resourceTypeGeneral="Text">Journal article</resourceType>
  <alternateIdentifiers>
    <alternateIdentifier alternateIdentifierType="url">https://aperta.ulakbim.gov.tr/record/6603</alternateIdentifier>
  </alternateIdentifiers>
  <relatedIdentifiers>
    <relatedIdentifier relatedIdentifierType="DOI" relationType="IsIdenticalTo">10.1093/bioinformatics/btz969</relatedIdentifier>
  </relatedIdentifiers>
  <rightsList>
    <rights rightsURI="http://www.opendefinition.org/licenses/cc-by">Creative Commons Attribution</rights>
    <rights rightsURI="info:eu-repo/semantics/openAccess">Open Access</rights>
  </rightsList>
  <descriptions>
    <description descriptionType="Abstract">Motivation: CellDesigner is a well-established biological map editor used in many large-scale scientific efforts. However, the interoperability between the Systems Biology Graphical Notation (SBGN) Markup Language (SBGN-ML) and the CellDesigner's proprietary Systems Biology Markup Language (SBML) extension formats remains a challenge due to the proprietary extensions used in CellDesigner files.</description>
  </descriptions>
</resource>
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