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Genome sequence analysis of a Helicoverpa armigera single nucleopolyhedrovirus (HearNPV-TR) isolated fromHeliothis peltigera in Turkey

Eroglu, Gozde Busra; Inan, Cihan; Nalcacioglu, Remziye; Demirbag, Zihni


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{
  "@context": "https://schema.org/", 
  "@id": 5269, 
  "@type": "ScholarlyArticle", 
  "creator": [
    {
      "@type": "Person", 
      "affiliation": "Karadeniz Tech Univ, Fac Sci, Dept Biol, Trabzon, Turkey", 
      "name": "Eroglu, Gozde Busra"
    }, 
    {
      "@type": "Person", 
      "affiliation": "Karadeniz Tech Univ, Fac Sci, Dept Mol Biol & Genet, Trabzon, Turkey", 
      "name": "Inan, Cihan"
    }, 
    {
      "@type": "Person", 
      "affiliation": "Karadeniz Tech Univ, Fac Sci, Dept Biol, Trabzon, Turkey", 
      "name": "Nalcacioglu, Remziye"
    }, 
    {
      "@type": "Person", 
      "affiliation": "Karadeniz Tech Univ, Fac Sci, Dept Biol, Trabzon, Turkey", 
      "name": "Demirbag, Zihni"
    }
  ], 
  "datePublished": "2020-01-01", 
  "description": "The entire genome of Helicoverpa armigera single nucleopolyhedrovirus (HearNPV-TR) was sequenced, and compared to genomes of other existing isolates. HearNPV-TR genome is 130.691 base pairs with a 38.9% G+C content and has 137 open reading frames (ORFs) of >= 150 nucleotides. Five homologous repeated sequences (hrs) and two baculovirus repeated ORFs (bro-a andbro-b) were identified. Phylogenetic analysis showed that HearNPV-TR is closer to HaSNPV-C1, HaSNPV-G4, HaSNPV-AU and HasNPV. However, there are significant differences inhr3,hr5 regions and inbro-a gene. Pairwise Kimura-2 parameter analysis of 38 core genes sequences of HearNPV-TR and other Helicoverpa NPVs showed that the genetic distances for these sequences were below 0.015 substitutions/site. Genomic differences as revealed by restriction profiles indicated thathr3,hr5regions andbro-a gene may play a role in the virulence of HearNPV-TR.", 
  "headline": "Genome sequence analysis of a Helicoverpa armigera single nucleopolyhedrovirus (HearNPV-TR) isolated fromHeliothis peltigera in Turkey", 
  "identifier": 5269, 
  "image": "https://aperta.ulakbim.gov.tr/static/img/logo/aperta_logo_with_icon.svg", 
  "license": "http://www.opendefinition.org/licenses/cc-by", 
  "name": "Genome sequence analysis of a Helicoverpa armigera single nucleopolyhedrovirus (HearNPV-TR) isolated fromHeliothis peltigera in Turkey", 
  "url": "https://aperta.ulakbim.gov.tr/record/5269"
}
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