1 Ocak 2020 Dergi makalesi Açık Erişim

Muratcioglu, Serena; Aydin, Cihan; Odabasi, Ezgi; Ozdemir, E. Sila; Firat-Karalar, Elif Nur; Jang, Hyunbum; Tsai, Chung-Jung; Nussinov, Ruth; Kavakli, Ibrahim Halil; Gursoy, Attila; Keskin, Ozlem

Dublin Core

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  <dc:creator>Muratcioglu, Serena</dc:creator>
  <dc:creator>Aydin, Cihan</dc:creator>
  <dc:creator>Odabasi, Ezgi</dc:creator>
  <dc:creator>Ozdemir, E. Sila</dc:creator>
  <dc:creator>Firat-Karalar, Elif Nur</dc:creator>
  <dc:creator>Jang, Hyunbum</dc:creator>
  <dc:creator>Tsai, Chung-Jung</dc:creator>
  <dc:creator>Nussinov, Ruth</dc:creator>
  <dc:creator>Kavakli, Ibrahim Halil</dc:creator>
  <dc:creator>Gursoy, Attila</dc:creator>
  <dc:creator>Keskin, Ozlem</dc:creator>
  <dc:date>2020-01-01</dc:date>
  <dc:description>Ras recruits and activates effectors that transmit receptor-initiated signals. Monomeric Ras can bind Raf; however, Raf's activation requires dimerization, which can be facilitated by Ras dimerization. Previously, we showed that active K-Ras4B dimerizes in silico and in vitro through two major interfaces: (i) beta-interface, mapped to Switch I and effector-binding regions, (ii) alpha-interface at the allosteric lobe. Here, we chose constitutively active K-Ras4B as our control and two double mutants (K101D and R102E; and R41E and K42D) in the alpha- and beta-interfaces. Two of the mutations are from The Cancer Genome Atlas (TCGA) and the Catalogue Of Somatic Mutations In Cancer (COSMIC) data sets. R41 and R102 are found in several adenocarcinomas in Ras isoforms. We performed site-directed mutagenesis, cellular localization experiments, and molecular dynamics (MD) simulations to assess the impact of the mutations on K-Ras4B dimerization and function. alpha-interface K101D/R102E double mutations reduced dimerization but only slightly reduced downstream phosphorylated extracellular signal-regulated kinase (ERK) (pERK) levels. While beta-interface R41E/K42D double mutations did not interfere with dimerization, they almost completely blocked KRas4B-mediated ERK phosphorylation. Both double mutations increased downstream phosphorylated Akt (pAkt) levels in cells. Changes in pERK and pAkt levels altered ERK- and Akt-regulated gene expressions, such as EGR1, JUN, and BCL2L11. These results underscore the role of the alpha-interface in K-Ras4B homodimerization and the beta-surface in effector binding. MD simulations highlight that the membrane and hypervariable region (HVR) interact with both alpha- and beta-interfaces of K-Ras4B mutants, respectively, inhibiting homodimerization and probably effector binding. Mutations at both interfaces interfered with mitogen-activated protein kinase (MAPK) and phosphoinositide 3-kinase signaling but in different forms and extents. We conclude that dimerization is not necessary but enhances downstream MAPK signaling. (C) 2020 Elsevier Ltd. All rights reserved.</dc:description>
  <dc:identifier>https://aperta.ulakbim.gov.trrecord/8711</dc:identifier>
  <dc:identifier>oai:zenodo.org:8711</dc:identifier>
  <dc:rights>info:eu-repo/semantics/openAccess</dc:rights>
  <dc:rights>http://www.opendefinition.org/licenses/cc-by</dc:rights>
  <dc:source>JOURNAL OF MOLECULAR BIOLOGY 432(4) 1199-1215</dc:source>
  <dc:title>Oncogenic K-Ras4B Dimerization Enhances Downstream Mitogen-activated Protein Kinase Signaling</dc:title>
  <dc:type>info:eu-repo/semantics/article</dc:type>
  <dc:type>publication-article</dc:type>
</oai_dc:dc>