1 Ocak 2016 Dergi makalesi Açık Erişim

Demirci, Yahya Emin; Inan, Cihan; Gunel, Aslihan; Maytalman, Dilara; Mert, Zafer; Baykal, A. Tarik; Korkut, Senay Vural; Arda, Nazli; Hasancebi, Semra

MARC21 XML

<?xml version='1.0' encoding='UTF-8'?>
<record xmlns="http://www.loc.gov/MARC21/slim">
  <leader>00000nam##2200000uu#4500</leader>
  <datafield tag="245" ind1=" " ind2=" ">
    <subfield code="a">Proteome profiling of the compatible interaction between wheat and stripe rust</subfield>
  </datafield>
  <datafield tag="909" ind1="C" ind2="4">
    <subfield code="p">EUROPEAN JOURNAL OF PLANT PATHOLOGY</subfield>
    <subfield code="v">145</subfield>
    <subfield code="n">4</subfield>
    <subfield code="c">941-962</subfield>
  </datafield>
  <controlfield tag="001">58787</controlfield>
  <datafield tag="980" ind1=" " ind2=" ">
    <subfield code="a">user-tubitak-destekli-proje-yayinlari</subfield>
  </datafield>
  <datafield tag="520" ind1=" " ind2=" ">
    <subfield code="a">Over the last decade, comparative molecular profiling studies between compatible and incompatible plant-pathogen interactions have shown that susceptible response of the host to a pathogen requires factors that promote disease development. In this study, we examined proteome profiles during a compatible interaction between wheat and stripe rust. A 2D-LC system (ProteomeLab PF2D) was used for protein separation and to compare the proteome from infected and control samples. More than 700 protein peaks at each time point were compared between pathogen- and mock-inoculated samples. Selected proteins, with significant differences in abundance were identified by nanoLC-ESI- MS/MS and generated spectra were searched against the wheat protein databases from UniProt, and NCBI and the Puccinia database from The Broad Institute. In total, the identified proteins comprised of 62 % wheat and 38 % Pst proteins. All identified proteins were searched by bioinformatics-based algorithms to detect their subcellular localization and signal peptide motifs which have the potential to catch the candidate effector proteins. The wheat proteins were classified based on their function. Although a compatible interaction, many wheat proteins, such as antioxidants, PRs and cold-responsive proteins, are implicated in defense and stress tolerance. On the pathogen side, 64 proteins were identified, and included some important pathogenicity proteins that can play role in pathogen virulence and suppress the host defense. In addition, we discovered that nine proteins have a signal sequence and three of the hypothetical fungal proteins, PGTG_11681T0, PGTG_07231T0 and CBH50687.1, have been tentatively identified as candidate effectors.</subfield>
  </datafield>
  <datafield tag="650" ind1="1" ind2="7">
    <subfield code="2">opendefinition.org</subfield>
    <subfield code="a">cc-by</subfield>
  </datafield>
  <datafield tag="700" ind1=" " ind2=" ">
    <subfield code="u">Istanbul Univ, Dept Mol Biol &amp; Genet, Fac Sci, Istanbul, Turkey</subfield>
    <subfield code="a">Inan, Cihan</subfield>
  </datafield>
  <datafield tag="700" ind1=" " ind2=" ">
    <subfield code="u">Ahi Evran Univ, Fac Sci &amp; Arts, Dept Chem, Kirsehir, Turkey</subfield>
    <subfield code="a">Gunel, Aslihan</subfield>
  </datafield>
  <datafield tag="700" ind1=" " ind2=" ">
    <subfield code="u">Istanbul Univ, Dept Biol, Fac Sci, Istanbul, Turkey</subfield>
    <subfield code="a">Maytalman, Dilara</subfield>
  </datafield>
  <datafield tag="700" ind1=" " ind2=" ">
    <subfield code="u">Field Crop Res Inst, POB 226, Ankara, Turkey</subfield>
    <subfield code="a">Mert, Zafer</subfield>
  </datafield>
  <datafield tag="700" ind1=" " ind2=" ">
    <subfield code="u">Acibadem Univ, Sch Med, Dept Med Biochem, Istanbul, Turkey</subfield>
    <subfield code="a">Baykal, A. Tarik</subfield>
  </datafield>
  <datafield tag="700" ind1=" " ind2=" ">
    <subfield code="u">Yildiz Tech Univ, Dept Mol Biol &amp; Genet, Fac Sci, Istanbul, Turkey</subfield>
    <subfield code="a">Korkut, Senay Vural</subfield>
  </datafield>
  <datafield tag="700" ind1=" " ind2=" ">
    <subfield code="u">Istanbul Univ, Dept Mol Biol &amp; Genet, Fac Sci, Istanbul, Turkey</subfield>
    <subfield code="a">Arda, Nazli</subfield>
  </datafield>
  <datafield tag="700" ind1=" " ind2=" ">
    <subfield code="u">Trakya Univ, Dept Genet &amp; Bioengn, Fac Engn, Edirne, Turkey</subfield>
    <subfield code="a">Hasancebi, Semra</subfield>
  </datafield>
  <datafield tag="980" ind1=" " ind2=" ">
    <subfield code="b">article</subfield>
    <subfield code="a">publication</subfield>
  </datafield>
  <datafield tag="542" ind1=" " ind2=" ">
    <subfield code="l">open</subfield>
  </datafield>
  <datafield tag="100" ind1=" " ind2=" ">
    <subfield code="u">Yildiz Tech Univ, Dept Mol Biol &amp; Genet, Fac Sci, Istanbul, Turkey</subfield>
    <subfield code="a">Demirci, Yahya Emin</subfield>
  </datafield>
  <datafield tag="260" ind1=" " ind2=" ">
    <subfield code="c">2016-01-01</subfield>
  </datafield>
  <controlfield tag="005">20210316003609.0</controlfield>
  <datafield tag="909" ind1="C" ind2="O">
    <subfield code="o">oai:zenodo.org:58787</subfield>
    <subfield code="p">user-tubitak-destekli-proje-yayinlari</subfield>
  </datafield>
  <datafield tag="856" ind1="4" ind2=" ">
    <subfield code="z">md5:d1e8149e334c40bbdb917f557c0605fb</subfield>
    <subfield code="s">249</subfield>
    <subfield code="u">https://aperta.ulakbim.gov.trrecord/58787/files/bib-838adec1-08e3-4d7d-b6ff-452f71d4b890.txt</subfield>
  </datafield>
  <datafield tag="540" ind1=" " ind2=" ">
    <subfield code="u">http://www.opendefinition.org/licenses/cc-by</subfield>
    <subfield code="a">Creative Commons Attribution</subfield>
  </datafield>
  <datafield tag="024" ind1=" " ind2=" ">
    <subfield code="a">10.1007/s10658-016-0882-1</subfield>
    <subfield code="2">doi</subfield>
  </datafield>
</record>