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OmniQC: An Open Source Desktop Application for Modern FASTQ Quality Control

OZSOY, Ata Umut


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{
  "URL": "https://aperta.ulakbim.gov.tr/record/286532", 
  "abstract": "<p>OmniQC is an open-source desktop tool developed specifically to carry out quality control analysis of next-generation sequencing data. This tool enables bioinformatics scientists to use a graphic and easy-to-use graphical user interface in assessing the quality of FASTQ files. It calculates eight basic parameters, which include base sequencing quality, GC distribution, number of duplications, adapter contamination, and N-content, which it automatically qualifies as pass/warn/fail. It is possible to print out graphical reports in professional PDF format. Technologically, it utilizes React, Electron, and Python. It also uses an SQLite database. It is compatible with Windows 10/11 operating systems. With a license agreement of free use under MIT, it is available to, and contributions may also be made by, bioinformatics scientists on GitHub.</p>", 
  "author": [
    {
      "family": "OZSOY", 
      "given": " Ata Umut"
    }
  ], 
  "id": "286532", 
  "issued": {
    "date-parts": [
      [
        2025, 
        12, 
        16
      ]
    ]
  }, 
  "language": "eng", 
  "title": "OmniQC: An Open Source Desktop Application for Modern FASTQ Quality Control", 
  "type": "article", 
  "version": "v.1.0.0"
}
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