Published January 1, 2020
| Version v1
Journal article
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cd2sbgnml: bidirectional conversion between CellDesigner and SBGN formats
Creators
- 1. Univ Lyon, European Inst Syst Biol & Med, CIRI UMR5308, CNRS,ENS,UCBL,INSERM, F-69007 Lyon, France
- 2. Bilkent Univ, Dept Comp Engn, TR-06800 Ankara, Turkey
Description
Motivation: CellDesigner is a well-established biological map editor used in many large-scale scientific efforts. However, the interoperability between the Systems Biology Graphical Notation (SBGN) Markup Language (SBGN-ML) and the CellDesigner's proprietary Systems Biology Markup Language (SBML) extension formats remains a challenge due to the proprietary extensions used in CellDesigner files.
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