Published January 1, 2025 | Version v1
Journal article Open

Three new Microbacterium species isolated from the Marmara Sea mucilage event: <i>Microbacterium istanbulense</i> sp. nov., <i>Microbacterium bandirmense</i> sp. nov., <i>Microbacterium marmarense</i> sp. nov

  • 1. Bursa Uludag Univ, Fac Vet Med, Dept Aquat Anim Dis, TR-16059 Bursa, Turkiye
  • 2. Bursa Uludag Univ, Grad Sch Nat Sci, TR-16059 Bursa, Turkiye
  • 3. Turkish German Univ, Dept Mol Biotechnol, TR-34820 Istanbul, Turkiye
  • 4. Yildiz Tech Univ, Fac Arts & Sci, Dept Mol Biol & Genet, TR-34220 Istanbul, Turkiye
  • 5. Erciyes Univ, Fac Vet Med, Dept Microbiol, TR-38020 Kayseri, Turkiye
  • 6. Kirikkale Univ, Fac Vet Med, Dept Internal Med, TR-71450 Kirikkale, Turkiye
  • 7. Istanbul Univ, Fac Sci, Dept Biol, Div Hydrobiol, TR-34452 Istanbul, Turkiye
  • 8. Erciyes Univ, Fac Vet Med, Dept Aquat Anim & Dis, Kayseri, Turkiye
  • 9. Bursa Uludag Univ, Fac Vet Med, Dept Food Hyg & Technol, TR-16059 Bursa, Turkiye
  • 10. Nucleogene Diag & Biotechnol R&D, TR-34400 Istanbul, Turkiye

Description

Three bacterial strains, Mu-43T, Mu-80T, and Mu-86T, were isolated from the 2021 and 2022 mucilage event in the Marmara Sea and were taxonomically characterized. 16S rRNA gene sequence analysis confirmed that these strains belong to the genus Microbacterium. A polyphasic approach involving genomic and phenotypic analysis was employed to determine their taxonomic positions. A polyphasic approach integrating genomic and phenotypic analyses established their taxonomic positions. M. istanbulense Mu-43T showed 99.0% 16S rRNA similarity to M. bandirmense Mu-80T, with digital DNA-DNA hybridization (dDDH) and average nucleotide identity using BLAST (ANIb) values of 22.3 % and 78.3 %, respectively. M. bandirmense Mu-80T exhibited 99.2 % similarity to M. esteraromaticum DSM 8609T, with dDDH and ANIb values of 23.6 % and 80 %. M. marmarense Mu-86T showed 97.4 % similarity to M. arthrosphaerae JCM 30492T, with dDDH and ANIb values of 20.1 % and 74.2 %. Metagenomic analysis highlighted their ecological relevance, with relative abundances of 1.43 %, 1.15 %, and 0.95 %, respectively. Further genomic analysis identified biosynthetic gene clusters associated with secondary metabolite production, including non-ribosomal peptide synthetases and terpenoid biosynthesis pathways, suggesting potential antimicrobial activity. Additionally, antibiotic resistance genes, such as ABC efflux pumps and Erm23S_rRNA methyltransferase, indicate adaptation to environmental stress. These findings indicate that these species contribute to nutrient cycling and organic matter decomposition in mucilage-affected environments. Based on genomic and phenotypic data, these strains are proposed as novel species: M. istanbulense sp. nov. Mu-43T (LMG 33297T = DSM 117065T), M. bandirmense sp. nov. Mu-80T (LMG 33295T = DSM 117210T), and M. marmarense sp. nov. Mu-86T (LMG 33293T = DSM 117066T).

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