Published January 1, 2010 | Version v1
Journal article Open

Improving performances of suboptimal greedy iterative biclustering heuristics via localization

  • 1. Kadir Has Univ, Dept Comp Engn, TR-34083 Istanbul, Turkey
  • 2. Bogazici Univ, Dept Comp Engn, TR-34342 Istanbul, Turkey

Description

Motivation: Biclustering gene expression data is the problem of extracting submatrices of genes and conditions exhibiting significant correlation across both the rows and the columns of a data matrix of expression values. Even the simplest versions of the problem are computationally hard. Most of the proposed solutions therefore employ greedy iterative heuristics that locally optimize a suitably assigned scoring function.

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