Published January 1, 2011 | Version v1
Journal article Open

Reliability-Oriented bioinformatic networks visualization

  • 1. Kadir Has Univ, Dept Comp Engn, TR-34083 Istanbul, Turkey
  • 2. Bogazici Univ, Dept Comp Engn, TR-34342 Istanbul, Turkey

Description

We present our protein-protein interaction (PPI) network visualization system RobinViz (reliability-oriented bioinformatic networks visualization). Clustering the PPI network based on gene ontology (GO) annotations or biclustered gene expression data, providing a clustered visualization model based on a central/peripheral duality, computing layouts with algorithms specialized for interaction reliabilities represented as weights, completely automated data acquisition, processing are notable features of the system.

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