Yayınlanmış 1 Ocak 2009 | Sürüm v1
Dergi makalesi Açık

Supercoil formation in DNA denaturation

  • 1. Koc Univ, Dept Phys, TR-34450 Istanbul, Turkey
  • 2. Weizmann Inst Sci, Dept Phys Complex Syst, IL-76100 Rehovot, Israel

Açıklama

We generalize the Poland-Scheraga model to the case of a circular DNA, taking into account the twisting of the two strains around each other. Guided by recent single-molecule experiments on DNA strands, we assume that the torsional stress induced by denaturation enforces the formation of supercoils whose writhe absorbs the linking number expelled by the loops. Our model predicts that when the entropy parameter of a loop satisfies c <= 2, denaturation transition does not take place. On the other hand, for c>2, a first-order denaturation transition is consistent with our model and may take place in the actual system, as in the case with no supercoils. These results are in contrast with other treatments of circular DNA melting where denaturation is assumed to be accompanied by an increase in twist rather than writhe on the bound segments.

Dosyalar

bib-d9f9c4ee-1de0-4ae7-9e78-8356e0f1b360.txt

Dosyalar (119 Bytes)

Ad Boyut Hepisini indir
md5:6fef409954ae901dd268acccc8041d5a
119 Bytes Ön İzleme İndir