Preview

SCPRO-HI.zip

SCPRO-HI-main
- Data
  - PBMC
    - GSE164378_batch1.h5ad 70.9 MB
    - GSE164378_batch2.h5ad 100.0 MB
  - Simulated
    - Simulated1.h5ad 874.3 kB
    - Simulated2.h5ad 874.3 kB
  - Subsamples
    - Rosenberg.npy 16.1 kB
    - Saunders.npy 16.1 kB
    - Tabula_muris.npy 16.1 kB
    - Zeisel.npy 16.1 kB
    - wcct4d_term_srcluster120k.npy 160.1 kB
    - zac_Cyno_ifgn_term_srcluster120k.npy 160.1 kB
    - zac_Rheus_ifgn_term_srcluster120k.npy 160.1 kB
    - zac_ifgn_term_srcluster120k.npy 160.1 kB
  - cross-species
    - Cross-species.h5ad 101.5 MB
    - Cynomolgus_monkeys_ifgn.h5ad 19.2 MB
    - Human_ifgn.h5ad 24.0 MB
    - Human_with_h1n1.h5ad 21.9 MB
    - Rheus_macaques_ifgn.h5ad 23.1 MB
- README.md 2.3 kB
- SCPRO.py 4.1 kB
- src
  - VAE.py 4.1 kB
  - comparison.py 5.9 kB
  - performance.py 5.0 kB
  - scpro_hi.py 30.2 kB
- tutorial.ipynb 2.1 kB